Segger Documentation
Note: the most up-to-date Segger documentation is now on a Google-sites page, here.
How to use Segger:
- Segmenting a density map
- Fitting molecular structures to segmented regions
- Comparing fitting scores for map-model validation
Segger is on the Chimera plug-in page. There is also a How to use Segger documentation page on the Chimera website, with good additional information on Segger.
Here are three brief (Flash) videos about Segger:
For more technical details of the methods used by Segger:
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G. Pintilie, J. Zhang, W. Chiu, D. Gossard
Identifying Components in 3D Density Maps of Protein Nanomachines by Multi-scale Segmentation
In Life Science Systems and Applications Workshop, IEEE/NIH, pp. 44-47, 2009, IEEExplore DSpace -
G. Pintilie, J. Zhang, T. Goddard, W. Chiu, D. Gossard
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
Journal of Structural Biology, vol. 170, Jun. 2010, pp. 427-438. Pubmed, ScienceDirect
Last updated July 14, 2011
