Collaboration and Service
- Paredes, A. M., Ferreira, D., Horton, M., Saad, A., Tsuruta, H., Johnston, R., Klimstra, W., Ryman, K., Hernandez, R., Chiu, W., and Brown, D. T. (2004). Conformational changes in Sindbis virions resulting from exposure to low pH and interactions with cells suggest that cell penetration may occur at the cell surface in the absence of membrane fusion. Virology 324, 373-386.
- Zhang, Z., Melia, T. J., He, F., Yuan, C., McGough, A., Schmid, M. F., Wensel, T.G. (2004). How a G-protein binds a membrane. J Biol Chem 279, 33937-33945.
- Mao Y, Vyas NK, Vyas MN, Chen DH, Ludtke SJ, Chiu W, Quiocho FA (2004). Structure of the bifunctional and Golgi-associated formiminotransferase cyclodeaminase octamer. Embo J 23, 2963-71.
- Nason EL, Rothagel R, Mukherjee SK, Kar AK, Forzan M, Prasad BV, Roy P (2004). Interactions between the inner and outer capsids of bluetongue virus. J Virol 78, 8059-67.
- Dormitzer PR, Nason EB, Prasad BV, Harrison SC (2004) Structural rearrangements in the membrane penetration protein of a non-enveloped virus. Nature 430, 1053-8.
- Chen C, Ko Y, Delannoy M, Ludtke SJ, Chiu W, Pedersen PL (2004) Mitochondrial ATP synthasome: three-dimensional structure by electron microscopy of the ATP synthase in complex formation with carriers for Pi and ADP/ATP. J Biol Chem 279, 31761-8.
- Wan, Y., Chiu, W. (2004) A Transform Method for Fast Generalized Image Registration, IEEE International Conference on Acoustics, Speech and Signal Processing, Montreal, Canada, pp. 1-5. Kloc M, Bilinski S, Dougherty MT, Brey EM, Etkin LD (2004) Formation, architecture and polarity of female germline cyst in Xenopus. Dev Biol 266: 43-61.
- Wilk, K., S. Bilinski, M.T. Dougherty, and M. Kloc (2005). Delivery of germinal granules and localized RNAs via the messenger transport organizer pathway to the vegetal cortex of Xenopus oocytes occurs through directional expansion of the mitochondrial cloud. Int J Dev Biol 49: 17-21.
- Ludtke, S.J., Serysheva, II, S.L. Hamilton, and W. Chiu (2005). The pore structure of the closed RyR1 channel. Structure (Camb). 13:1203-11.
- Guarino, L.A., K. Bhardwaj, W. Dong, J. Sun, A. Holzenburg, and C. Kao, (2005). Mutational analysis of the SARS virus Nsp15 endoribonuclease: identification of residues affecting hexamer formation. J Mol Biol 353: 1106-17.
- Blau, M., S. Mullapudi, T. Becker, J. Dudek, R. Zimmermann, P.A. Penczek, and R. Beckmann (2005). ERj1p uses a universal ribosomal adaptor site to coordinate the 80S ribosome at the membrane. Nat Struct Mol Biol 12: 1015-6.
- Menetret, J.F., R.S. Hegde, S.U. Heinrich, P. Chandramouli, S.J. Ludtke, T.A. Rapoport, and C.W. Akey (2005). Architecture of the ribosome-channel complex derived from native membranes. J Mol Biol 348:445-57.
- Serysheva, II, S.L. Hamilton, W. Chiu, and S.J. Ludtke (2005). Structure of Ca2+ release channel at 14 Å resolution. J Mol Biol 345:427-31.
- Yu, X., D. Acehan, J.F. Menetret, C.R. Booth, S.J. Ludtke, S.J. Riedl, Y. Shi, X. Wang, and C.W. Akey (2005). A structure of the human apoptosome at 12.8 Å resolution provides insights into this cell death platform. Structure (Camb) 13: 1725-35.
- Sitharaman, B., K.R. Kissell, K.B. Hartman, L.A. Tran, A. Baikalov, I. Rusakova, Y. Sun, H.A. Khant, S.J. Ludtke, W. Chiu, S. Laus, E. Toth, L. Helm, A.E. Merbach, and L.J. Wilson (2005). Superparamagnetic gadonanotubes are high-performance MRI contrast agents. Chem Commun (Camb) 31:3915-7.
- Carson, J.P., T. Ju, H.-C. Lu, C. Thaller, M. Xu, S.L. Pallas, J. Warren, W. Chiu, and G. Eichele (2005). A Digital atlas to characterize the mouse brain transcriptome at cellular resolution. PLoS Comput Biol:1:e41.
- Baker, M. L., Jiang, W., Rixon, F. J. & Chiu, W. (2005). Common ancestry of herpesviruses and tailed DNA bacteriophages. J Virol 79: 14967-70.
- Paredes, A., Weaver, S., Watowich, S. and Chiu, W. (2005). Structural biology of old world and new world alphaviruses. Arch Virol Suppl 19: 179-85.
- Passmore, L. A., Booth, C. R., Venien-Bryan, C., Ludtke, S. J., Fioretto, C., Johnson, L. N., Chiu, W., and Barford, D. (2005). Structural analysis of the anaphase-promoting complex reveals multiple active sites and insights into polyubiquitylation. Mol Cell 20: 855-66.
- Arac, D., Chen, X., Khant, H. A., Ubach, J., Ludtke, S. J., Kikkawa, M., Johnson, A. E., Chiu, W., Sudhof, T. C., and Rizo, J. (2006). Close membrane-membrane proximity induced by Ca(2+)-dependent multivalent binding of synaptotagmin-1 to phospholipids. Nat Struct Mol Biol 13: 209-217.
- Jiang, W., Chang, J., Jakana, J. Weigele, P., King, J. and Chiu, W. (2006). Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus. Nature 439: 612-6.
- Chang, J., Weigele, P., King, J., Chiu, W., and Jiang, W. (2006). Cryo-EM asymmetric reconstruction of bacteriophage P22 reveals organization of its DNA packaging and infecting machinery. Structure 14: 1073-1082.
- Schmid, M. F., Paredes, Angel M., Khant, Htet A., Soyer, Ferda, Chiu, W. and Shively, Jessup M. (2006). Structure of Halothiobacillus neapolitanus carboxysomes by cryo-electron tomography. J Mol Biol. 364: 526-35 Monnier, N., Higo-Moriguchi, K., Sun, Z. Y. J., Prasad, B.V.V., Taniguchi, K., and Dormitzer, P.R. (2006). High-resolution molecular and antigen structure of the VP8* core of a sialic acid-independent human rotavirus strain. J Virol 80: 1513-1523.
- Jiang, X., Kumar, M., Jayaram, H., Ludtke, S. Estes, M.K., and Prasad, B.V.V. (2006). Cryo-EM structures of rotavirus NSP2-NSP5 and NSP2-RNA complexes: Implication fro genome replication. J Virol 80: 10829-35
- Ju, T., J. Warren, J. Carson, M. Bello, I. Kakadiaris, W. Chiu, C. Thaller, and G. Eichele. (2006). 3D volume reconstruction of a mouse brain from histological sections using warp filtering. J Neurosci Methods 156: 84-100.
- Chen, D. H., Song, J. L., Chuang, D. T., Chiu, W. & Ludtke, S. J. (2006). An expanded conformation of single-ring GroEL-GroES complex encapsulates an 86 kDa substrate. Structure 14: 1711-22.
- Marsh, M. P., Campos, S. K., Baker, M. L., Chen, C. Y., Chiu, W. & Barry, M. A. (2006). Cryoelectron microscopy of protein IX-modified adenoviruses suggests a new position for the C terminus of protein IX. J Virol 80: 11881-6.
- Chang, J., M. F. Schmid, F. Rixon, and Chiu, W. (2007). Electron cryo-tomography reveals the portal in the herpesvirus capsid. J Virol, 81: 2065-2068.
- Pope, W. H., Weigele, P. R., Chang, J., Pedulla, M. L., Ford, M. E., Houtz, J. M., Jiang, W., Chiu, W., Hatfull, G. F., Hendrix, R. W. & King, J. (2007). Genome sequence, structural proteins, and capsid organization of the cyanophage syn5: A "horned" bacteriophage of marine Synechococcus. J Mol Biol 368: 966-81.
- Bello, M., Ju, T., Carson, J., Warren, J., Chiu, W. and Kakadiaris, I.A. (2007). Learning-based segmentation framework for tissue images containing gene expression data. IEEE Trans on Med Imaging 26: 728-44.
- Lee, S., J.M. Choi, and F.T. Tsai (2007). Visualizing the ATPase cycle in a protein disaggregating machine: structural basis for substrate binding by ClpB. Mol Cell 25: 261-71.
- Reissmann, S., C. Parnot, C.R. Booth, W. Chiu, and J. Frydman (2007). Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins. Nat Struct Mol Biol 14: 432-40.
- Moiseenkova-Bell, V.Y., L.A. Stanciu, Serysheva, II, B.J. Tobe, and T.G. Wensel (2008). Structure of TRPV1 channel revealed by electron cryomicroscopy. Proc Natl Acad Sci U S A 105: 7451-5.
- Kloc, M., S. Bilinski, and M.T. Dougherty (2007). Organization of cytokeratin cytoskeleton and germ plasm in the vegetal cortex of Xenopus laevis oocytes depends on coding and non-coding RNAs: three-dimensional and ultrastructural analysis. Exp Cell Res 313: 1639-51.
- Parmenter, C.D., M.C. Cane, R. Zhang, and S. Stoilova-McPhie (2008). Cryo-electron microscopy of coagulation Factor VIII bound to lipid nanotubes. Biochem Biophys Res Commun 366: 288-93.
- Ménétret, J-F, Schaletzky, J., Clemons Jr., W.M., Osborne, A.R., Skånland, S.S., Denison, C. Gygi, S.P., Kirkpatrick, D.S., Park, E., Ludtke, S.J., Rapoport, T.A., and Akey, C.W. (2007) Ribosome binding of a single copy of the SecY complex: Implications for protein translocation. Mol. Cell 28:1083-1092.
- Booth, C.R., A.S. Meyer, Y. Cong, M. Topf, A. Sali, S.J. Ludtke, W. Chiu, and J. Frydman (2008). Mechanism of lid closure in the eukaryotic chaperonin TRiC/CCT. Nat Struct Mol Biol 15: 746-53.
- Serysheva, II, S.J. Ludtke, M.L. Baker, Y. Cong, M. Topf, D. Eramian, A. Sali, S.L. Hamilton, and W. Chiu, 2008. Subnanometer-resolution electron cryomicroscopy-based domain models for the cytoplasmic region of skeletal muscle RyR channel. Proc Natl Acad Sci U S A 105: 9610-5.
- Wu, G., A. Mikhailovsky, H.A. Khant, C. Fu, W. Chiu, and J.A. Zasadzinski (2008). Remotely triggered liposome release by near-infrared light absorption via hollow gold nanoshells. J Am Chem Soc in press.
- Dong-Hua Chen, Kathryn Luke, Junjie Zhang, Wah Chiu and Pernilla Wittung-Stafshede (2008). Location and flexibility of the unique C-terminal tail of Aquifex aeolicus co-chaperonin protein 10 as derived by cryo-EM and biophysical techniques. J Mol Biol 381: 707-17.
- Kloc, M., Mariusz Jaglarz, Matthew Dougherty, M. David Stewart, Liesl Nel-Themaat, Szczepan Bilinski (2008). Mouse early oocytes are transiently polar: three-dimensional and ultrastructural analysis. Exp Cell Res in press.
- McCarley, Robin, Ong, W., Yang, Y. and Cruciano, A. (2008). Redox-Triggered Contents Release from Liposomes. J Amer Chem Soc submitted.
